Oakes, BL, Xia, DF, Rowland, EF, Xu, DJ, Ankoudinova, I, Borchart, J Zhang, L, Li, P, Miller, JC, Rebar, EJ, and Noyes, MB (2016) A Multi-reporter selection for the design of active and more specific zinc-finger nucleases for genome editing. Nature Communications. DOI: 10.1038/ncomms10194

Persikov, AV, Wetzel, J, Rowland, EF, Oakes, BL, Xu, DJ, Singh, M and Noyes, MB (2015) A systematic survey of the Cys2His2 zinc finger DNA-binding landscape. Nucleic Acids Res, 43, 1965-84.
·      Designated a Breakthrough Article
·      Cover – Feb, 2015

Xu, DJ and Noyes, MB (2014) Understanding DNA-binding Specificity by Bacterial Hybrid Selection. Briefings in Functional Genomics, Epub Dec 23, 2014, PMID: 25539837

Persikov, AV, Rowland, EF, Oakes, BL, Singh, M. and Noyes, MB (2014) Deep sequencing of large library selections allows computational discovery of diverse sets of zinc fingers that bind common targets. Nucleic Acids Res, 42,1497-508

McIsaac, RS, Oakes, BL, Botstein, D. and Noyes, MB (2013) Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters. J Vis Exp., doi: 10.3791/51153.

McIsaac, RS, Oakes, BL, Wang, X, Dummit, KA, Botstein, D and Noyes, MB (2013) Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Nucleic Acids Res, 41, No. 4 e57

Chu, SW*, Noyes, MB*, Christensen, RG, Pierce BG, et al (2012) Exploring the DNA-Recognition Potential of Homeodomains. Genome Research, 22,1889-98.

Anderson, D.M., George, R., Noyes, M.B., Rowton, M., et al (2012) Characterization of the DNA-binding properties of the Mohawk homeobox transcription factor. J. Biol Chem, 42, 35351-9.

Christensen RG, Enuameh MS, Noyes MB, Brodsky MH, Wolfe SA, Stormo GD. (2012). Recognition Models to Predict DNA-binding Specificities of Homeodomain Proteins. Bioinformatics, 12, 184-9.

Noyes MB (2011) Analysis of Specific Protein-DNA Interactions by Bacterial One-Hybrid Assay. Methods Mol. Biol., 786, 79-95.

Noyes M.B., Christensen R.G., Wakabayashi A., Stormo G.D., Brodsky, M.H., and Wolfe, S.A. (2008).  Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell, 133, 1277-1289.
·      highlighted in Editor’s Choice section (2008). Science, 321, 16.

Noyes M.B., Meng X., Wakabayashi A., Brodsky M.H., and Wolfe S.A. (2008) A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic Acids Res, 38, 2547-60.  

Meng X., Noyes M.B., Zhu L., Lawson N.D., and Wolfe S.A. (2008) Targeted gene inactivation in zebrafish using engineered zinc finger nucleases. Nature Biotechnology, 26, 695-701